MIRAGE upload

Sample handling of gastric tissue and O-glycan alterations in paired gastric cancer and non-tumorigenic tissues

Peak	Intensity
347.23	1.1
371.24	2.6
389.0	3.2
Annotations: ZZ
389.34	0.9
Annotations: ZZ
407.14	3.3
Annotations: ZY YZ
426.18	0.6
509.07	1.3
527.26	6.3
544.96	1.0
550.77	1.0
Annotations: ZZ
551.06	1.1
Annotations: ZZ
552.9	0.9
569.3	48.3
Annotations: Z
570.36	2.1
Annotations: ^{2,4}A_{GalNAc}
586.08	1.1
586.86	1.8
Annotations: YY Y
587.37	4.4
Annotations: YY Y
588.61	0.7
610.1	4.7
610.32	2.4
611.21	0.7
Annotations: ^{1,3}A_{GalNAc}
612.53	1.0
625.27	1.7
628.26	1.0
628.53	0.8
682.45	0.7
790.21	0.6
Annotations: YY
810.81	1.0
835.38	0.5
836.19	1.0
859.51	0.8
873.88	1.3
877.02	2.1
Annotations: Z
878.3	0.7
894.81	0.9
895.3	6.2
Annotations: Y
895.57	1.3
Annotations: Y
896.55	0.9
917.69	0.9
918.47	5.0
Annotations: Z
919.43	0.8
934.4	0.6
Annotations: Z
936.28	2.2
Annotations: Y
937.48	1.0
952.47	0.6
Annotations: Y
958.24	1.5
996.46	0.7
1002.01	0.8
1008.23	1.4
1038.36	9.7
1038.87	0.7
1039.5	2.5
1056.51	2.1
1683.08	1.5
1872.51	1.1

There are 11 similar spectra:

Id	Structure	Score
2975		0.97
494		0.85
2799		0.82
2797		0.76
2973		0.76
164		0.76
205		0.76
206		0.76
3678		0.76
521		0.73
475		0.60

Structure Format

SNFG Oxford Text

Structure details

Reducing Mass 1097.43
(Calculated Monoisotopic)

Reducing End Reduced

Persubstitution Underivatised

Biological Context

Taxonomy - Homo Sapiens

Tissue - Gastric Mucosa

HPLC

Column Custom made Hypercarb

Method

45 gradient with 10 ul/min run rate
10 mM Ammonium Bicarbonate
10 mM Ammonium Bicarbonate in 80% acetonitrile

Mass Spec

Thermo Fisher LTQ Linear Ion Trap ESI

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